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h2o-genmodel version 3.26.0.3 API


This document describes how to use H2O's generated MOJO and POJO models.

See: Description

Packages 
PackageDescription
hex
Shared code between the H2O runtime and generated POJO and POJO models.
hex.genmodel
Low-level information about generated POJO and MOJO models.
hex.genmodel.algos.deeplearning 
hex.genmodel.algos.deepwater 
hex.genmodel.algos.deepwater.caffe 
hex.genmodel.algos.deepwater.caffe.nano 
hex.genmodel.algos.drf 
hex.genmodel.algos.ensemble 
hex.genmodel.algos.gbm 
hex.genmodel.algos.glm 
hex.genmodel.algos.glrm 
hex.genmodel.algos.isofor 
hex.genmodel.algos.kmeans 
hex.genmodel.algos.pipeline 
hex.genmodel.algos.psvm 
hex.genmodel.algos.svm 
hex.genmodel.algos.targetencoder 
hex.genmodel.algos.tree 
hex.genmodel.algos.word2vec 
hex.genmodel.annotations 
hex.genmodel.attributes 
hex.genmodel.attributes.metrics 
hex.genmodel.descriptor 
hex.genmodel.easy
The easy prediction API for generated POJO and MOJO models.
hex.genmodel.easy.error 
hex.genmodel.easy.exception
Exceptions that can be raised by generated POJO and MOJO models.
hex.genmodel.easy.prediction
Prediction types that can be returned by generated POJO and MOJO models.
hex.genmodel.tools
Tools that use generated POJO and MOJO models.
hex.genmodel.utils 
water.genmodel
Deprecated (see hex.genmodel instead).
water.util
Deprecated (see hex.util instead).

This document describes how to use H2O's generated MOJO and POJO models.

About generated models

H2O-generated MOJO and POJO models are intended to be easily embeddable in any Java environment.The only compilation and runtime dependency for a generated model is the h2o-genmodel.jarfile produced as the build output of this package.

There are subtle differences between POJOs and MOJOs especially in the main.java file and inspecifying the model output. If you are just getting started, refer to the Quick start sectionsfor MOJOs and POJOs first, thenlook at the documentation for the hex.genmodel.easy package.

The following topics are covered here:

POJOs

MOJOs



What is a POJO?

H2O allows you to convert the models you have built to aPlain Old Java Object (POJO).POJOs allow users to build a model using H2O and then deploy the model to score in real-time.

Note: POJOs are not supported for XGBoost, GLRM, or Stacked Ensembles models.



POJO Quick start

Step 1 (in terminal window 1): Start H2O

$ java -jar h2o.jar

Step 2 (in a web browser): Build model

  1. Go to http://localhost:54321
  2. Click "view example Flows" near the right edge of the screen. Refer to the following screenshot:
  3. Click "GBM_Airlines_Classification.flow"
  4. If a confirmation prompt appears, click "Load Notebook"
  5. From the "Flow" menu, choose "Run all cells"
  6. Scroll down and find the "Model" cell in the notebook. Click the Download POJO button (shown in the following screenshot):
  7. NOTE: The instructions below assume the POJO model was downloaded to the "Downloads" folder.

Step 3 (in a *new* terminal window - H2O must still be running in the first terminal window): Download model pieces

$ mkdir experiment$ cd experiment$ mv ~/Downloads/gbm_pojo_test.java .$ curl http://localhost:54321/3/h2o-genmodel.jar > h2o-genmodel.jar

Step 4 (in terminal window 2): Create the main program

Create a new file called main.java (for example, using vim main.java) with the following contents.Note that the modelClassName must match the downloaded model name.
import java.io.*;import hex.genmodel.easy.RowData;import hex.genmodel.easy.EasyPredictModelWrapper;import hex.genmodel.easy.prediction.*;public class main {  private static String modelClassName = "gbm_pojo_test";  public static void main(String[] args) throws Exception {    hex.genmodel.GenModel rawModel;    rawModel = (hex.genmodel.GenModel) Class.forName(modelClassName).newInstance();    EasyPredictModelWrapper model = new EasyPredictModelWrapper(rawModel);    //    // By default, unknown categorical levels throw PredictUnknownCategoricalLevelException.    // Optionally configure the wrapper to treat unknown categorical levels as N/A instead    // and strings that cannot be converted to numbers also to N/As:    //    //     EasyPredictModelWrapper model = new EasyPredictModelWrapper(    //         new EasyPredictModelWrapper.Config()    //             .setModel(rawModel)    //             .setConvertUnknownCategoricalLevelsToNa(true)    //             .setConvertInvalidNumbersToNa(true)    //     );    RowData row = new RowData();     row.put("Year", "1987");     row.put("Month", "10");     row.put("DayofMonth", "14");     row.put("DayOfWeek", "3");     row.put("CRSDepTime", "730");     row.put("UniqueCarrier", "PS");     row.put("Origin", "SAN");     row.put("Dest", "SFO");    BinomialModelPrediction p = model.predictBinomial(row);    System.out.println("Label (aka prediction) is flight departure delayed: " + p.label);    System.out.print("Class probabilities: ");    for (int i = 0; i < p.classProbabilities.length; i++) {      if (i > 0) {        System.out.print(",");      }      System.out.print(p.classProbabilities[i]);    }    System.out.println("");  }}

Step 5 (in terminal window 2): Compile and Run

$ javac -cp h2o-genmodel.jar -J-Xmx2g -J-XX:MaxPermSize=128m gbm_pojo_test.java main.java# Linux and OS X users$ java -cp .:h2o-genmodel.jar main# Windows users$ java -cp .;h2o-genmodel.jar main
The following output displays:
        Label (aka prediction) is flight departure delayed: YES        Class probabilities: 0.4790490513429604,0.5209509486570396

Appendix: PDF of the Flow that built this model



Extracting generated models from H2O

Generated models can be extracted from H2O in the following ways:

From the H2O Flow Web UI:

When viewing a model, click the "Download POJO" button at the top of the model cell(refer to the example in the "Quick Start" section).You can also preview the POJO inside Flow, but it will only show the first 1000lines or so in the web browser, truncating large models.

From R:

The following code snippet represents an example of H2O building a model and downloading itscorresponding POJO from an R script:
library(h2o)h2o.init()path <- system.file("extdata", "prostate.csv", package = "h2o")h2o_df <- h2o.importFile(path)h2o_df$CAPSULE <- as.factor(h2o_df$CAPSULE)model <- h2o.glm(y = "CAPSULE",                x = c("AGE", "RACE", "PSA", "GLEASON"),                training_frame = h2o_df,                family = "binomial")h2o.download_pojo(model)

From Python:

The following code snippet represents an example of H2O building a model and downloading itscorresponding POJO from a Python script:
import h2oh2o.init()from h2o.estimators.glm import H2OGeneralizedLinearEstimatorpath = "http://s3.amazonaws.com/h2o-public-test-data/smalldata/prostate/prostate.csv.zip"h2o_df = h2o.import_file(path)h2o_df['CAPSULE'] = h2o_df['CAPSULE'].asfactor()model = H2OGeneralizedLinearEstimator(family = "binomial")model.train(y = "CAPSULE",            x = ["AGE", "RACE", "PSA", "GLEASON"],            training_frame = h2o_df)h2o.download_pojo(model)

From Java:

TODO: provide pointer of doing this directly from Java

From Sparkling Water:

The following code snippet represents an example of H2O building a model and downloading itscorresponding POJO from a Sparkling water script:
import org.apache.spark.h2o._val h2oContext = H2OContext.getOrCreate(sc)import h2oContext._import org.apache.spark.examples.h2o._import java.io.Fileval dataFile = "examples/smalldata/allyears2k_headers.csv.gz"val airlinesData = new H2OFrame(new File(dataFile))import _root_.hex.tree.gbm.GBMimport _root_.hex.tree.gbm.GBMModel.GBMParametersval gbmParams = new GBMParameters()  gbmParams._train = airlinesData  gbmParams._response_column = 'IsDepDelayed  gbmParams._model_id = water.Key.make("model")  gbmParams._ntrees = 5  gbmParams._max_depth = 2val gbm = new GBM(gbmParams)val model = gbm.trainModel.getimport water._import _root_.hex._import java.net.URIimport water.serial.ObjectTreeBinarySerializerdef exportPOJOModel(model : Model[_, _,_], destination: URI): URI = {    val destFile = new File(destination)    val fos = new java.io.FileOutputStream(destFile)    val writer = new model.JavaModelStreamWriter(false)    try {      writer.writeTo(fos)    } finally {      fos.close()    }    destination}exportPOJOModel(model, new File("./GbmModel.java").toURI)


Use cases

The following use cases are demonstrated with code examples:

Reading new data from a CSV file and predicting on it

The PredictCsv class is used by the H2O test harness to makepredictions on new data points.

Getting a new observation from a JSON request and returning a prediction

See the Consumer loan application github repository.

A user-defined-function called directly from hive

See the H2O World 2015 Training github repository.

What is a MOJO?

A MOJO (Model Object, Optimized) is an alternative to H2O's currently available POJO. As withPOJOs, H2O allows you to convert models that you build to MOJOs, which can then be deployedfor scoring in real time.

Notes:

  • MOJOs are supported for AutoML, Deep Learning, DRF, GBM, GLM, GLRM, K-Means, Stacked Ensembles, SVM, Word2vec, and XGBoost algorithms.
  • MOJOs are only supported for encodings that are either default or Enum.

Benefit of MOJOs over POJOs

While POJOs continue to be supported, some customers encountered issues with large POJOs notcompiling. (Note that POJOs are not supported for source files larger than 1G.) MOJOs do nothave a size restriction and address the size issue by taking the tree out of the POJO and usinggeneric tree-walker code to navigate the model. The resulting executable is much smaller andfaster than a POJO.

At large scale, new models are roughly 20-25 times smaller in disk space, 2-3 times fasterduring "hot" scoring (after JVM is able to optimize the typical execution paths), and 10-40 timesfaster in "cold" scoring (when JVM doesn't know yet know the execution paths) compared to POJOs.These efficiency gains are larger the bigger the size of the model.

H2O conducted in-house testing using models with 5000 trees of depth 25. At very small scale(50 trees / 5 depth), POJOs were found to perform approximately 10% faster than MOJOs for binomialand regression models, but 50% slower than MOJOs for multinomial models.



MOJO Quick start

MOJOs are built in much the same way as POJOs. The example code belowshows how to start H2O and then build a model using either R or Python.

Step 1: Start H2O, then build and extract the model

The examples below describe how to create a model using R and Python. Thedownload_mojo() function saves the model as a zip file. You canunzip the file to view the options used to build the file along with eachtree built in the model. Note that each tree file is saved as a binary file type.

Build and extract a model using R
  1. Open a terminal window and start r.
  2. Run the following commands to build a simple GBM model. 
            library(h2o)        h2o.init(nthreads=-1)        path <- system.file("extdata", "prostate.csv", package="h2o")        h2o_df <- h2o.importFile(path)        h2o_df$CAPSULE <- as.factor(h2o_df$CAPSULE)        model <- h2o.gbm(y="CAPSULE",                        x=c("AGE", "RACE", "PSA", "GLEASON"),                        training_frame=h2o_df,                        distribution="bernoulli",                        ntrees=100,                        max_depth=4,                        learn_rate=0.1)
  3. Download the MOJO and the resulting h2o-genmodel.jar file to a new experiment folder. Be sure to specify the entire path for the MOJO, not just the relative path. 
    modelfile <- h2o.download_mojo(model, path="~/experiments/", get_genmodel_jar=TRUE)                print("Model saved to " + modelfile)                 Model saved to /Users/user/GBM_model_R_1475248925871_74.zip"
Build and extract a model using Python
  1. Open a new terminal window and start python.
  2. Run the following commands to build a simple GBM model. 
            import h2o        from h2o.estimators.gbm import H2OGradientBoostingEstimator        h2o.init()        h2o_df = h2o.load_dataset("prostate.csv")        h2o_df["CAPSULE"] = h2o_df["CAPSULE"].asfactor()        model=H2OGradientBoostingEstimator(distribution="bernoulli",                                           ntrees=100,                                           max_depth=4,                                           learn_rate=0.1)        model.train(y="CAPSULE",                    x=["AGE","RACE","PSA","GLEASON"],                    training_frame=h2o_df)
  3. Download the MOJO and the resulting h2o-genmodel.jar file to a new experiment folder. Be sure to specify the entire path for the MOJO, not just the relative path. 
            modelfile = model.download_mojo(path="~/experiment/", get_genmodel_jar=True)                print("Model saved to " + modelfile)                Model saved to /Users/user/GBM_model_python_1475248925871_888.zip

Step 2: Compile and Run the MOJO

  1. Open a *new* terminal window and change directories to the experiment folder: 
            $ cd experiment
  2. Create your main program in the experiment folder by creating a new file called main.java (for example, using "vim main.java"). Include the following contents. Note that this file references the GBM model created above using R. 
            import java.io.*;        import hex.genmodel.easy.RowData;        import hex.genmodel.easy.EasyPredictModelWrapper;        import hex.genmodel.easy.prediction.*;        import hex.genmodel.MojoModel;        public class main {          public static void main(String[] args) throws Exception {            EasyPredictModelWrapper model = new EasyPredictModelWrapper(MojoModel.load("GBM_model_R_1475248925871_74.zip"));            RowData row = new RowData();            row.put("AGE", "68");            row.put("RACE", "2");            row.put("DCAPS", "2");            row.put("VOL", "0");            row.put("GLEASON", "6");            BinomialModelPrediction p = model.predictBinomial(row);            System.out.println("Has penetrated the prostatic capsule (1=yes; 0=no): " + p.label);            System.out.print("Class probabilities: ");            for (int i = 0; i < p.classProbabilities.length; i++) {              if (i > 0) {                System.out.print(",");              }              System.out.print(p.classProbabilities[i]);            }            System.out.println("");          }        }
    GBM and DRF return classProbabilities, but not all MOJOs will return a classProbabilities field. Refer to the ModelPrediction definition for each algorithm to find the correct field(s) to access. This is available in the H2O-3 GitHub repo at:     https://github.com/h2oai/h2o-3/tree/master/h2o-genmodel/src/main/java/hex/genmodel/easy/prediction.

    In addition to classProbabilities, in GBM and DRF you can also choose to generate the leafNodeAssignments field, which will show the decision path through each tree. Note that this may slow down the MOJO as it adds computation. Below is the Java code showing how return the leaf node assignment: 

             import java.io.*;         import hex.genmodel.easy.RowData;         import hex.genmodel.easy.EasyPredictModelWrapper;         import hex.genmodel.easy.prediction.*;         import hex.genmodel.MojoModel;         public class main {           public static void main(String[] args) throws Exception {             EasyPredictModelWrapper.Config config = new EasyPredictModelWrapper.Config().setModel(MojoModel.load("GBM_model_R_1475248925871_74.zip")).setEnableLeafAssignment(true);             EasyPredictModelWrapper model = new EasyPredictModelWrapper(config);             RowData row = new RowData();             row.put("AGE", "68");             row.put("RACE", "2");             row.put("DCAPS", "2");             row.put("VOL", "0");             row.put("GLEASON", "6");             BinomialModelPrediction p = model.predictBinomial(row);             System.out.println("Has penetrated the prostatic capsule (1=yes; 0=no): " + p.label);             System.out.print("Class probabilities: ");             for (int i = 0; i < p.classProbabilities.length; i++) {               if (i > 0) {             System.out.print(",");               }               System.out.print(p.classProbabilities[i]);             }             System.out.println("Leaf node assighnments: ");             for (int i=0; i < p.leafNodeAssignments; i++) {               if (i > 0) {               System.out.print.(p.leafNodeAssignments[i]);               }             }             System.out.println("");           }         }

  3. Compile and run in terminal window 2. 
            $ javac -cp h2o-genmodel.jar -J-Xms2g -J-XX:MaxPermSize=128m main.java        # Linux and OS X users        $ java -cp .:h2o-genmodel.jar main        # Windows users        $ java -cp .;h2o-genmodel.jar main
The following output displays:

Has penetrated the prostatic capsule (1 yes; 0 no): 0Class probabilities: 0.8059929056296662,0.19400709437033375

How to view a MOJO model

A java tool for converting binary mojo files into human viewable graphs is packaged with H2O.This tool produces output that "dot" (which is part of Graphviz) can turn into an image.(See the Graphviz home page for more information.)

Here is example output for a GBM model:

From R:

The following code snippet shows how to download a MOJO from R and run the PrintMojo tool onthe command line to make a .png file. To better control the look and feel of your tree, weprovide two options for PrintMojo. ``--decimalplaces`` (or ``-d``) allows you to control the number of decimal points shown for numbers. ``--fontsize`` (or ``-f``) controls the font size. The default font size is 14. When using this option, be careful not to choose a font size that is so large that you cannot see your whole tree. We recommend using a font size no larger than 20.
library(h2o)h2o.init()df <- h2o.importFile("http://s3.amazonaws.com/h2o-public-test-data/smalldata/airlines/allyears2k_headers.zip")model <- h2o.gbm(model_id = "model",                training_frame = df,                x = c("Year", "Month", "DayofMonth", "DayOfWeek", "UniqueCarrier"),                y = "IsDepDelayed",                max_depth = 3,                ntrees = 5)h2o.download_mojo(model, getwd(), FALSE)# Now download the latest stable h2o release from http://www.h2o.ai/download/# and run the PrintMojo tool from the command line.## (For MacOS: brew install graphviz)java -cp h2o.jar hex.genmodel.tools.PrintMojo --tree 0 -i model.zip -o model.gv -f 20 -d 3dot -Tpng model.gv -o model.pngopen model.png

Using an XGBoost MOJO with Maven

If you declare a dependency on h2o-genmodel, then you also have to include the h2o-genmodel-ext-xgboost dependency if you are planning to use XGBoost models. For example:

&lt;groupId&gt;ai.h2o&lt;/groupId&gt;&lt;artifactId&gt;xgboost-mojo-example&lt;/artifactId&gt;&lt;version&gt;1.0-SNAPSHOT&lt;/version&gt;&lt;dependencies&gt;    &lt;dependency&gt;        &lt;groupId&gt;ai.h2o&lt;/groupId&gt;        &lt;artifactId&gt;h2o-genmodel-ext-xgboost&lt;/artifactId&gt;        &lt;version&gt;3.20.0.3&lt;/version&gt;    &lt;/dependency&gt;    &lt;dependency&gt;        &lt;groupId&gt;ai.h2o&lt;/groupId&gt;        &lt;artifactId&gt;h2o-genmodel&lt;/artifactId&gt;        &lt;version&gt;3.20.0.3&lt;/version&gt;    &lt;/dependency&gt;&lt;/dependencies&gt;
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